INTRODUCTION
The large (L) protein of the nonsegmented negative-stranded RNA viruses, members of the order
Mononegavirales, is an ∼240-kDa RNA-dependent RNA polymerase that catalyzes viral RNA (vRNA) synthesis. The L protein, together with the phosphoprotein (P), forms a P/L polymerase complex that functions for the transcription and replication of viral genomic RNA. In addition to the viral P protein, it has long been suggested that host proteins are involved in the function of viral L protein. β-tubulin, elongation factor 1, and guanylyltransferase interact with vesicular stomatitis virus (VSV) L protein and function as necessary factors for the synthesis of VSV RNAs (
1–3). DNA topoisomerase 1 colocalizes and interacts with Ebola virus L protein and is required for efficient polymerase activity (
4). Dynein light chain 1 acts as a transcription factor that stimulates rabies virus (RV) primary transcription by binding to the viral L protein (
5). Heat shock protein 90 (Hsp90) functions as a molecular chaperone of the L proteins of human respiratory syncytial virus (HRSV), VSV, Nipah virus (NiV), measles virus (MeV), and mumps virus (MuV) (
6–8). R2TP (Rvb1-Rvb2-Tah1-Pih1) complex is a cochaperone of Hsp90 and is involved in regulating the transcription of MeV and MuV by interacting with their L proteins (
9).
Hsp90, an evolutionarily conserved molecular chaperone from bacteria to mammals, has been extensively confirmed to be required for virus replication (
6–22). By promoting the proper folding and maturation, Hsp90 contributes to the stability of viral proteins and thus regulates virus replication (
23). Hsp90 activity is important for bluetongue virus (BTV) replication by stabilizing and preventing degradation of the BTV proteins (
20). In the case of rubella virus (RUBV), Hsp90 is an important host factor for RUBV replication by contributing to the functional integrity of the p150 protein and promoting p200 processing (
21). Foot-and-mouth disease virus (FMDV) assembles capsid via the multimerization of several copies of a single capsid precursor protein into a pentamer, and Hsp90 promotes FMDV capsid precursor processing and subsequent pentamer formation (
17). In addition, increasing evidence suggests that Hsp90 binds with the viral polymerase protein L and maintains its stability, such as in HRSV (
6), VSV (
7), NiV (
7), MeV (
7), and MuV (
8). However, the underlying mechanism was still not fully clear.
Snakehead vesiculovirus (SHVV), a fish rhabdovirus isolated from diseased hybrid snakehead fish (
24), contains a single-stranded, nonsegmented, negative-sense RNA molecule with a size of ∼11 kb. The SHVV genome encodes five structural proteins including nucleoprotein (N), P protein, matrix protein (M), glycoprotein (G), and L protein (
25,
26). In this study, we identified Hsp90 as an interacting partner of SHVV L and a host factor required for SHVV replication because SHVV replicated poorly when Hsp90 was knocked down by specific small interfering RNA (siRNA) or inhibited by inhibitors. Further study showed that Hsp90 activity was required for stabilizing SHVV L, and the SHVV P also played an important role in the stability of SHVV L via preventing the L protein from misfolding and aggregating into the insoluble form. Moreover, the soluble and insoluble SHVV L underwent degradation by Hsp90 dysfunction through the autophagy pathway and proteasomal pathway, respectively. In summary, our data reveal that Hsp90 regulates SHVV replication by stabilizing the L protein.
DISCUSSION
L protein, an RNA-dependent RNA polymerase of the nonsegmented negative-stranded RNA viruses, functions in the transcription and replication of the viral genomic RNA. Although several host proteins have been identified as being involved in the function of the viral L protein (
1–9), it is still of interest to investigate the interacting partners of the L protein and unveil the effects of the interactions on virus replication. In this study, the cellular interactome of SHVV L was investigated in SHVV-infected cells using Co-IP and liquid chromatography-tandem mass spectrometry (LC-MS/MS). Of the 32 potential interacting proteins, two heat shock proteins, including Hsp90 and Hsp70, were selected for further verification because both Hsp90 and Hsp70 have been identified in the interactomes of HRSV and MuV L proteins (
6,
9). However, Hsp90, but not Hsp70, has been proven to interact with the L proteins of HRSV, MeV, and MuV (
6–8). Herein, Hsp90 was also proven to be an interacting partner of SHVV L by using Co-IP and subcellular localization. However, although coprecipitated with the L protein in SHVV-infected cells, Hsp70 was not coprecipitated with SHVV L expressed alone in cells. It is thereby hypothesized that Hsp70 might indirectly interact with the L proteins of SHVV, HRSV, and MuV via binding to other viral proteins that associate with the L proteins, such as the P protein.
Hsp90, a molecular chaperone that facilitates the folding and stabilization of its client proteins (
29), has been extensively confirmed to be required for virus replication via maintaining the stability of viral proteins (
9,
12–15,
17,
18,
20–22,
30). The data in the present study showed that Hsp90 dysfunction suppressed SHVV RNA synthesis, protein expression, and viral production. Since we used Hsp90-targeted siRNA and two kinds of Hsp90-specific inhibitors, it is unlikely that our results were related to off-target activities. Moreover, our data suggested that Hsp90 activity was required for SHVV replication via stabilizing SHVV L as the Hsp90 dysfunction by its inhibitor-degraded SHVV L. Similarly, the Hsp90 activity was also required for maintaining the stability of the L proteins of HRSV, VSV, NiV, and MuV because Hsp90 dysfunction also caused degradation of these L proteins (
6–8). The exception is the MeV L, which was poorly affected by Hsp90 inhibitor when expressed alone (
7). Our data, together with previous reports (
6–8), demonstrate that Hsp90 chaperone activity is required for the stability of the L proteins of many mononegaviruses.
The presence or absence of P protein may affect Hsp90 dysfunction-mediated degradation of the L protein. Hsp90 dysfunction caused degradation of HRSV L, irrespective of the P coexpression (
6). However, the MeV L expressed alone was poorly affected by the Hsp90 dysfunction, while the presence of MeV P significantly promoted Hsp90 dysfunction-mediated degradation of MeV L (
7). In this study, we found that Hsp90 dysfunction degraded SHVV L no matter the absence or presence of SHVV P, but the presence of SHVV P also significantly promoted Hsp90 dysfunction-mediated degradation of SHVV L. More importantly, the Hsp90 dysfunction-mediated degradation of SHVV L was alleviated by MG132 (proteasomal pathway inhibitor) in the absence of SHVV P, while it was alleviated by 3-MA (autophagy pathway inhibitor) in the presence of SHVV P. This phenomenon was quite different from MeV L. In the presence of P, the Hsp90 dysfunction-mediated degradation of MeV L was alleviated by MG132 but not 3-MA (
7). Our data, together with a previous report (
7), suggest that P protein affects the degradation of the L proteins of mononegaviruses when Hsp90 activity is inhibited.
The viral P protein functions differently in the maturation of the L protein. The MeV and VSV L proteins undergo aggregation into the insoluble form in the absence of the P proteins, while the presence of the P proteins prevents the aggregation of the L proteins via promoting their solubility (
7). However, the presence of MuV P functions to prevent degradation, but not aggregation, of the MuV L (
8). Consistent with the MeV and VSV L proteins, the SHVV L expressed alone was detected mainly in the insoluble form, while the presence of SHVV P significantly increased the soluble L protein. Therefore, the P protein can promote the solubility of the L proteins of many mononegaviruses, such as MeV, VSV, and SHVV. Moreover, we found that the Hsp90 dysfunction-mediated degradation of the soluble SHVV L was alleviated by 3-MA, while the insoluble SHVV L was alleviated by MG132, suggesting that the soluble and insoluble SHVV L proteins were degraded through autophagy and proteasomal pathway, respectively. Previous research has reported that Hsp90 dysfunction-mediated degradation of the insoluble MeV and VSV L proteins could be alleviated by MG132 (
7). However, how the Hsp90 dysfunction caused degradation of the soluble MeV and VSV L proteins was not investigated (
7).
Taken together, Hsp90 activity is commonly required for the replication of many mononegaviruses via maintaining the L protein stability. Our data will provide new insights into understanding the role of Hsp90 in the maturation of the L proteins of mononegaviruses. Moreover, our study is the first report to reveal the chaperone role of Hsp90 in the replication of aquatic viruses, which will help design antiviral drugs targeting fish Hsp90 and breed new antiviral fish species based on Hsp90.
MATERIALS AND METHODS
Cells and viruses.
Channel catfish ovary (CCO) cells were cultured at 25°C in minimum essential medium (MEM) (HyClone) supplemented with 10% fetal bovine serum (FBS) (Gibco), penicillin (100 g/ml), and streptomycin (100 g/ml). The 293T cells were cultured at 37°C and 5% CO
2 atmosphere in Dulbecco’s modified Eagle medium (DMEM) (HyClone) containing 10% FBS, penicillin (100 g/ml), and streptomycin (100 g/ml). SHVV (GenBank accession number
KP876483.1) was isolated from diseased hybrid snakehead fish and stored at −80°C (
24).
Plasmids.
The plasmids pCDNA-N, pCDNA-P, pCDNA-M, pCDNA-G, and pCDNA-L have been constructed previously (
31,
32). The plasmid pEGFP-L was constructed by amplifying the SHVV L gene from pCDNA-L and cloning into pEGFP-N1 using the primers listed in
Table 1. The plasmids pDsRED-Hsp90 and pFlag-Hsp90 were constructed by amplifying the Hsp90 gene from CCO cells and cloning into pDsRED-N1 or p3XFlag-CMV-14 using primers listed in
Table 1. The plasmid pFlag-Hsp70 was constructed by amplifying the Hsp70 gene from CCO cells and cloning into p3XFlag-CMV-14 using primers listed in
Table 1.
Reagents and antibodies.
17-DMAG, geldanamycin, MG132, 3-MA, and cycloheximide (CHX) were purchased from Selleck Biotechnology Co., LTD. (Shanghai, China). Small interfering RNAs (siRNAs) of Hsp90 (siHsp90) and the control siRNA (siNC) were synthesized from GenePharma Co., Ltd (Shanghai, China). The rabbit anti-SHVV-N, -P, -M, -G, and -L polyclonal antibodies were made by Abiotech (Jinan, China). The mouse anti-β-actin, anti-GFP, anti-Flag, and anti-Hsp90 antibodies were purchased from ABclone Biotechnology Co., Ltd (Wuhan, China). The secondary anti-rabbit IgG and anti-mouse IgG antibodies were purchased from ABclone Biotechnology Co., Ltd.
Virus infection and titration.
CCO cells were infected with SHVV at a multiplicity of infection (MOI) of 0.1. After 2 h adsorption at 25°C, the inoculum was removed, and the cells were washed twice with phosphate-buffered saline (PBS), followed by adding fresh MEM. At different time points postinfection, the supernatants were collected for virus titration by 50% tissue culture infectious dose (TCID
50), while the cells were harvested for the detection of viral proteins by Western blotting or viral mRNA and genomic RNA (vRNA) by quantitative reverse transcription-PCR (qRT-PCR) with primers listed in
Table 1.
qRT-PCR.
Total RNA was extracted from cells with TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. For the detection of SHVV G mRNA or vRNA, 1 μg RNA was mixed with 1 μl random primer, 4 μl 4× genomic DNA (gDNA) wiper mix (TaKaRa), and RNase-free H2O to a total volume of 16 μl. After incubation at 42°C for 2 min, 4 μl 5× select qRT supermix II was added and then incubated at 50°C for 15 min and 85°C for 2 min. The quantitative PCRs were conducted in 20 μl volume containing 10 μl AceQ qPCR SYBR green master mix (Vazyme), 1 μl cDNA template, 0.4 μl forward primer, 0.4 μl backward primer, and 8.2 μl double-distilled water (ddH2O) with the following cycling conditions: 95°C for 5 min, 45 cycles at 95°C for 10 s, 60°C for 10 s, and 72°C for 15 s, and ended with a 95°C at 5°C/s calefactive velocity to make the melt curve. Date were normalized to the level of β-actin in each sample using the 2−ΔΔCT method.
Immunostaining.
The 293T cells were transfected with plasmids pEGFP-L and pDsRED-Hsp90, pEGFP-L and pDsRED-N1, and pEGFP-N1 and pDsRED-Hsp90, respectively. At 24 h posttransfection, the cells were fixed with paraformaldehyde for 15 min and then permeabilized in 0.5% Triton X-100 for 10 min, followed by incubation with 4′,6-diamidino-2-phenylindole (DAPI). After washing three times with PBS, the samples were detected using confocal microscope.
Western blotting.
For the preparation of soluble cell extracts, cells were lysed in urea-free cell lysis buffer (10 mM Tris-Cl, pH 7.5, 150 mM NaCl, 0.5 mM ethylenediaminetetraacetic acid [EDTA], 0.5% NP-40, 0.09% sodium azide). For the preparation of insoluble cell extracts, cells were lysed in the above cell lysis buffer containing 8 M urea. The protein samples were separated by SDS-PAGE and transferred onto polyvinylidene difluoride membranes (Biosharp). The membranes were blocked with 5% skim milk in tris-buffered saline with 0.1% Tween 20 (TBST) at 4°C overnight, followed by incubation with the anti-N (1:1,000), anti-P (1:1,000), anti-M (1:1,000), anti-G (1:1,000), anti-L (1:1,000), anti-Flag (1:2,000), anti-Hsp90 (1:1,000), anti-GFP (1:2,000), or anti-β-actin (1:2,000) antibodies for 2 h at room temperature. The membranes were washed three times with TBST and incubated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit antibody (1:5,000) or anti-mouse antibody (1:5,000) for 1 h at room temperate. The signal intensity was then determined using the Amersham Imager 600 system.
Coimmunoprecipitation.
SHVV-infected CCO cells or plasmid-transfected 293T cells were collected and subjected to Co-IP using anti-L or anti-Flag antibody according to the manufacturer’s instructions of Pierce Co-IP kit (Thermo Fisher). The eluted samples were then used for Western blotting.
Statistical analysis.
All statistical analyses were performed using GraphPad Prism 5.0 (GraphPad Software). The statistical significance of the data was determined by Student’s t test, and a P < value of <0.05 was considered statistically significant. Asterisks (* and **) indicate statistically significant differences (*, P < 0.05; **, P < 0.01).