Genomic changes accompanying the adaptation of ASFV-G-ΔI177L to replicate in PIPEC.
The genomic changes acquired during the adaptation of ASFV-G-ΔI177L in PIPEC were assessed in the virus obtained after the7th passage (ASFV-G-ΔI177L/ΔLVRp7) using next-generation sequencing (NGS). Compared to the parental virus ASFV-G-ΔI177L, a deletion of 10,842 bp occurred between positions 16818 and 27660 of the ASFV-G-ΔI177L/ΔLVR genome. This genomic modification fully deletes the following genes belonging to the multigene family (MGF): MGF360-6L, MGF300-1L, MGF300-2R, MGF300-4L, MGF360-8L, MGF360-9L, and MGF360-10L. In addition, the genomic modification causes the deletion of the N-terminal portion of the MGF360-4L protein and the C terminus of the MGF360-11L protein. This deletion results in the creation of a novel hybrid protein, MGF360-4L/11L. The resulting ORF, which resides on the reverse coding strand, combines 830 nucleotides (nt) of MGF360-11L with 601 nt of MGF360-4L; thus, it is composed of 1,431 nt encoding a novel 476-amino-acid protein. One additional gene not belonging to the MGF, the X69R gene, is also deleted (
Fig. 2). Altogether, eight genes are deleted, with a fusion of two additional genes.
The genomic stability of ASFV-G-ΔI177L/ΔLVR was further assessed in the population of virus obtained after passage 30. NGS analysis demonstrated no major additional genomic changes from the virus obtained after the 7th passage and, after continuation to 20 and 30 passages, determined that there was only one additional mutation in the E119L protein at position 167044, changing a serine to a threonine, and a nucleotide change in B438L that did not change the corresponding amino acid sequence. All other point mutations occurred outside of any ORF. This indicates that the genomic changes that occurred early in the process of adaptation allowed for efficient replication of ASFV-G-ΔI177L/ΔLVR in the PIPEC line.
Assessment of ASFV-G-ΔI177L/ΔLVR replication in swine.
To evaluate if changes in the ASFV-G-ΔI177L/ΔLVRp11 genome affected the attenuated phenotype of parental virus ASFV-G-ΔI177L, a group of five 80- to 90-lb pigs were inoculated intramuscularly (i.m.) with a high dose (10
6 HAD
50) of ASFV-G-ΔI177L/ΔLVRp11 and were observed for 28 days. An additional, mock-inoculated animal was also included in the group to act as a sentinel, to test for the presence of virus shedding from the ASFV-G-ΔI177L/ΔLVR-inoculated animals. The five inoculated animals, as well as the sentinel, remained clinically normal and disease-free during the entire observation period, indicating that ASFV-G-ΔI177L/ΔLVR remains completely attenuated
in vivo (
Table 1 and
Fig. 3).
The induction of protection by live attenuated viruses (LAVs) is usually linked to the ability of the virus to replicate after inoculation (
2–8,
12). To assess the replication of ASFV-G-ΔI177L/ΔLVR in inoculated pigs, we quantified virus titers at different times postinfection (p.i.). Infected animals presented mild viremia (10
3 to 10
5.5 HAD
50/ml) at day 4 p.i., reaching peak titers (10
3.5 to 10
7 HAD
50/ml) by days 7 and 11 p.i., after which titers decreased (10
2.5 to 10
4 HAD
50/ml) until day 28 p.i. (
Fig. 4). Therefore, ASFV-G-ΔI177L/ΔLVR maintained the same complete attenuation phenotype as the parental virus ASFV-G-ΔI177L (
6), with the infected animals presenting long viremias with relatively low values. In addition, all blood samples as well as spleens of the sentinel animals were negative by virus titration (sensitivity, ≥1.8 HAD
50/ml), indicating the absence of virus shedding from the animals infected with ASFV-G-ΔI177L/ΔLVR.
Protective efficacy of ASFV-G-ΔI177L/ΔLVR against challenge with parental ASFV-G.
The ability of ASFV-G-ΔI177L/ΔLVR to protect animals against challenge with the virulent parental virus ASFV-G was tested at 28 days postinfection. Animals were challenged with 102 HAD50 of ASFV-G by the i.m. route. An additional group of five naive animals was challenged as a mock-inoculated control group.
As expected, all control animals displayed ASF-related signs beginning at day 4 postchallenge (4 dpc), with an increased severity in clinical signs until euthanasia by 7 dpc (
Table 2 and
Fig. 4). Conversely, animals infected with ASFV-G-ΔI177L/ΔLVR remained clinically normal with no signs of disease during the 21-day observational period. ASFV-G-ΔI177L/ΔLVR efficiently protected animals against disease when they were challenged with the highly virulent parental virus.
Viremia values from animals infected with ASFV-G were as expected, with high titers (10
7.5 to 10
8.5 HAD
50/ml) on day 4 p.i., increasing (averaging 10
8.5 HAD
50/ml) by day 7 p.i., when all animals were euthanized. Conversely, viremia measurements after challenge in all ASFV-G-ΔI177L/ΔLVR-infected animals progressively decreased until the end of the experimental period (21 days after challenge), when, importantly, no circulating virus could be detected in blood from any animals (
Fig. 4).
To investigate the effectiveness of ASFV-G-ΔI177L/ΔLVR at inducing protection against challenge, groups of five pigs were inoculated i.m. with decreasing doses of ASFV-G-ΔI177L/ΔLVRp11: 10
6, 10
4, and 10
2 HAD
50 per animal. As a control, an additional group was inoculated with 10
2 HAD
50 of ASFV-G-ΔI177L. In all cases, a noninoculated additional animal, a sentinel, was housed in the same room with the inoculated animals to assess the presence of virus shedding from the infected animals. As in the previous experiment, changes in body temperature and the potential presence of ASFV-related signs were recorded. None of the animals presented with clinical ASF disease during the 28-day observation period (
Table 1 and
Fig. 3).
Viremia kinetics in animals infected with 10
6 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR were nearly identical to those recorded in the previous experiment: mild viremia values by 4 days p.i. (dpi) (10
3 to 10
5 HAD
50/ml), peaking (10
3 to 10
7 HAD
50/ml) by days 7 and 11 p.i., and then decreasing (10
2.5 to 10
4 HAD
50/ml) by day 28 p.i. (
Fig. 4). Animals inoculated with 10
4 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR presented with viremia values that were slightly lower, though statistically similar to those of animals inoculated with 10
6 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR. Viremia values in animals inoculated with 10
2 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR were similar to those of animals receiving 10
4 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR, except that viremia was not detected until 7 dpi, and viremia titers at 11 dpi were significantly lower. Finally, animals inoculated with 10
2 HAD
50/ml of ASFV-G-ΔI177L had titers with a kinetics profile very similar to that of animals receiving the same dose of ASFV-G-ΔI177L/ΔLVR.
In summary, ASFV-G-ΔI177L/ΔLVR-infected animals had low-to-moderate titers that persisted throughout the 28-day observational period. No virus was detected in any of the samples (blood samples at all time points as well as tonsil and spleen samples obtained at 28 days p.i.) obtained from sentinel animals (data not shown), indicating that ASFV-G-ΔI177L/ΔLVR-infected animals did not shed enough virus to infect naive pigs during the 28 days of cohabitation.
To assess the protective effects of the different doses of ASFV-G-ΔI177L/ΔLVR, all groups were challenged at 28 dpi with 10
2 HAD
50 of ASFV-G by the i.m. route. Five naive animals were challenged as a mock-inoculated control group. All mock-inoculated animals started showing disease-related signs by 4 dpc, and disease severity evolved rapidly, with all animals euthanized by 7 dpc (
Table 2). Conversely, all groups of animals infected with either ASFV-G-ΔI177L/ΔLVR or ASFV-G-ΔI177L remained disease-free and clinically healthy.
Viremia values in control animals infected with ASFV-G were, as expected, high (10
7 to 10
8 HAD
50/ml) on day 4 p.i. and increased (averaging 10
8.5 HAD
50/ml) by day 7 p.i., when all animals were euthanized. After challenge, viremias in ASFV-G-ΔI177L/ΔLVR- or ASFV-G-ΔI177L-infected animals progressively decreased until the end of the experimental period (21 days after challenge), when no circulating virus could be detected in blood from animals inoculated with either 10
6 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR or 10
2 HAD
50/ml of ASFV-G-ΔI177L, and values remained very low (10
2.5 to 10
3.5 HAD
50/ml) in animals inoculated with 10
2 or 10
4 HAD
50/ml of ASFV-G-ΔI177L/ΔLVR (
Fig. 4).
As in the previous experiment, no virus was detected in any of the blood samples or in tonsil and spleen samples obtained at 28 days p.i. from sentinel animals, indicating that no ASFV-G-ΔI177L/ΔLVR-infected animals shed enough virus to infect naive pigs during the 28 days of cohabitation.
In addition, at 28 days postchallenge, the presence of the challenge virus was detected, using a differential PCR that specifically identifies the ASFV-G strain (
6), in two out of the five animals in the groups receiving 10
2 or 10
4 HAD
50 of ASFV-G-ΔI177L/ΔLVR. Conversely, no challenge virus was detected in the spleens and tonsils of any of the five animals receiving 10
6 HAD
50 of ASFV-G-ΔI177L/ΔLVR, indicating that high doses of ASFV-G-ΔI177L/ΔLVR can induce sterile immunity.
Therefore, ASFV-G-ΔI177L/ΔLVR induces protection even when administered in doses as low as 102 HAD50/ml. These results indicate that ASFV-G-ΔI177L/ΔLVR is as effective as ASFV-G-ΔI177L in inducing protection against challenge with the virulent parental virus ASFV-G.