Yeast cells expressing either Eα or 2W1S Ag epitopes were generated by
Agrobacterium-mediated transformation using a binary plasmid expressing a three-way fusion of the epitope, the red fluorescent protein (RFP) mCherrry (mCh) (
32), and a truncated version of BAD1. To streamline the generation of chimeric genes expressing different epitopes, an
Agrobacterium binary plasmid that contains unique cloning sites and the
ccdB gene inserted into the NcoI site in the truncated BAD1 gene was constructed. The
ccdB gene aids in the cloning of sequences of choice by preventing
Escherichia coli clones harboring nonrecombinant, parental plasmids from growing (
3). Primers were obtained from Integrated DNA Technologies (Coralville, IA). PCR for cloning was done using Elongase (Invitrogen, Carlsbad, CA). The starting plasmid was a derivative of pBAD1-6H, containing the truncated tandem repeat sequence (ΔTR20) of BAD1 (
5), called pΔ5-6H. The
ccdB gene was PCR amplified from an Invitrogen Gateway cassette-containing plasmid using primers that added NcoI and AscI sites at the 5′ end of the forward primer, tdsP182 (GCGCCCATGGCGCGCCTGGCCGGCCTACTAAAAGCCAGATAACAGT), and NcoI and SwaI at the 5′ end of the reverse primer, tdsP181 (GCGCCCATGGGATTTAAATCGGCCGGCCAGTCGTTCGGCTTCATCT). Following PCR, the 800-bp fragment was digested with NcoI and ligated with pΔ5-6H plasmid DNA that had also been digested with NcoI, and the ligated DNA was electroporated into an
E. coli strain permissive for growth with the
ccdB gene, DB3.1 (
35). Transformants were screened for the presence of the insert and correct orientation. In addition, the cloned plasmids were tested for a functional
ccdB gene by electroporating them into the nonpermissive strain DH10β and finding that transformants were severely restricted in growth. The ΔTR20-
ccdB chimeric gene was excised with XbaI (filled in) and EcoRI and moved into the
Agrobacterium binary vector pCTK4 (
28) at the HindIII (filled in) and EcoRI sites, creating plasmid pCTS33. A fragment containing the Eα epitope region of pTrc-Eα-RFP (encoding amino acids 52 to 68 and 6 flanking amino acids of the Eα protein [
19,
31] and the mCherry RFP gene [
32]) was generated using splicing overlap (SOE) PCR (
23) with Eα forward primer tdsP202 containing an incorporated AscI site at its 5′ end (CGCGGGCGCGCCGAAGAATTTGCAAAGTT), SOE fusion Eα-mCherry (Eα-mCh) reverse primer tdsP216 (AACCTGGATGTCATGGAGGTGAGCAAGGGCGAGGAG), SOE fusion Eα-mCherry forward primer tdsP217 (CTCCTCGCCCTTGCTCACCTCCATGACATCCAGGTT), and the mCherry reverse primer tdsP218 with a SmaI site at its 5′ end (CGCGCCCGGGCCTTGTACAGCTCGTCCAT). The fused fragment was digested with AscI and SmaI and ligated with pCTS33, which had been digested with AscI and SwaI, and the DNA was electroporated into
E. coli strain DH10β. To create a 2W1S epitope-mCherry fusion, a 93-nucleotide (nt) oligomeric primer that contains sequence encoding the 14-amino-acid 2W1S epitope (
29) flanked by 2 amino acids that match those flanking the comparable sequence of the Eα epitope and two glycine residue spacers was generated (composite amino acid sequence, GGSFEAWGALANWAVDSANLGG). In addition, this primer includes a 5′ end AscI site and 3′ end sequence for priming at the start of the mCherry sequence (tdsP615, GCGCGGCGCGCCGGCGGTAGCTTTGAGGCTTGGGGTGCACTGGCTAATTGGGCTGTGGACAGCGCTAACCTGGGCGGTGTGAGCAAGGGCGAG). Primer tdsP615 was used with tdsP618 (GGGCCTTGTACAGCTCGTCCAT) to amplify a cloned mCherry sequence and, in so doing, add the 2W1S epitope sequence. The fragment was digested with AscI, which cuts at the 5′ end of the fragment (the 3′ end was left blunt), and ligated to AscI- and SwaI-digested pCTS33. For both Eα and 2W1S, transformants were screened for plasmids with the new insert and sequenced to find those without PCR-induced mutations and to confirm that the Eα-mCherry or 2W1S-mCherry fragment had been inserted to create a single translational fusion in the ΔTR20 protein backbone. The plasmids were electroporated into
Agrobacterium tumefaciens strain LBA1100 harboring the Ti plasmid pAL1100 (
2,
10). Confirmed
A. tumefaciens strains were used to transform yeast-phase cells of
B. dermatitidis strain ATCC 26199 and strain 55, the BAD1-knockout derivative of ATCC 26199 (
5,
35).