Shiga toxin-producing
Escherichia coli (STEC) infections constitute a major public health concern because of the severe illnesses that they can cause, such as hemorrhagic colitis and hemolytic-uremic syndrome (HUS) (
33). The latter is the main cause of acute renal failure in early childhood and is also characterized by thrombocytopenia and microangiopathic hemolytic anemia (
21,
31). This syndrome is associated primarily with intestinal infections from STEC strains (
10,
14) that do not invade the epithelium (
20,
23) and release in the intestinal lumen two main types of toxins: Shiga toxin 1 (Stx1) and Stx2. The major portion of the histopathological lesions observed in HUS is the consequence of the interaction of these toxins with the endothelial lining of intestine, brain, and kidney (
23). It is of note that Stx2-producing
E. coli strains were more commonly associated with HUS than those producing Stx1 (
21).
The interaction of the toxins with the glycolypid receptors (usually Gb3, globotriaosylceramide) on the target endothelial cells is mediated by a pentamer of receptor-binding B subunits, noncovalently associated with the A subunit (
23). After the endocytic uptake, the intracellular reductive cleavage of the toxins, nicked by the cell protease furin (
23), generates the enzymatically active A1 fragment, which triggers the molecular damage within intoxicated cells. The A1 fragments arising from Stx1 and Stx2 display structural differences in the active site that might result in different mechanisms of binding of the substrate (
9). Nevertheless, both A1 fragments share the capacity to irreversibly inactivate eukaryotic ribosomes by removing a single specific adenine from the 28S rRNA of the 60S subunit, thus causing the arrest of protein synthesis (
6). However, rRNA is not the unique substrate of Stx1 since, in addition to the inhibition of translation induced by ribosomal injury, this toxin can damage DNA in human endothelial cells, inducing the formation of apurinic sites in the nucleus (
3). The nature of this nuclear DNA injury is consistent with the abstraction of multiple adenines from DNA (
2) and is not secondary to apoptosis (
3). Thus, Stx1 may be classified as a
N-glycosylase acting on either RNA and DNA. To our knowledge the ability of Stx2 to release adenine from DNA in intact cells or from the isolated nucleic acid has not yet been demonstrated. Here we show for the first time that Stx2 targets nuclear DNA in human vascular endothelial cells.
To better understand HUS pathogenesis, the consequences of the interaction between Stxs and endothelial cells need to be defined. The Stx-dependent enzymatic disruption of the key intracellular substrates described above might induce, after a considerable lag time, the intoxicated cells to participate in their own demise through the apoptotic pathway (
3,
19). On the other hand, many authors have independently demonstrated that treatment of different cell types (intestinal epithelial cells, endothelial cells, and monocytes) with Stx1 and Stx2 induces a specific response not related to apoptosis (
26,
32,
34,
36-
38). In particular, the treatment of endothelial cells with both Stxs leads to increased mRNA levels and protein expression of chemokines such as interleukin-8 (IL-8) and monocyte chemotactic protein 1 (
32,
38) and of cell adhesion molecules (
18). These findings were confirmed and extended by microarray experiments designed to evaluate in detail the gene expression changes in human endothelial cells in response to Stxs (
16). Only a small number of human genes appeared to be upregulated (25 by Stx1 and 24 by Stx2), and most of them encode proteins associated with inflammatory responses such as chemokines (IL-8) and cytokines (granulocyte-macrophage colony-stimulating factor [GM-CSF]). Such response patterns might contribute to HUS pathogenesis through the recruitment of inflammatory cells in the kidney. Notably, Stx2 showed stronger upregulating effects than Stx1. This observation is significant, since it may provide the molecular explanation of the epidemiologic association between Stx2-producing
E. coli strains and HUS. However, the relationship between the enzymatic activity of Stxs on the known intracellular substrates (ribosomes and DNA) and the upregulation of genes related to HUS pathogenesis remains unclear. It should be stressed that the treatment of cells with a nontoxic mutant of Stx1 lacking the enzymatic activity (
36) or with the pentamer of receptor binding B subunits (
26) did not induce the transcription of the above-mentioned proinflammatory genes or the synthesis of the corresponding proteins. In this context, the stimulation of the Gb3 receptor with a specific antibody was equally ineffective (
26). A possible relationship might be envisaged between gene activation and ribotoxic stress. It is recognized that 28S rRNA constitutes a ribosensor involved in the response of cells to various stimuli such as UV irradiation, antibiotics, or toxins (
12,
13). Sequence-specific 28S rRNA injuries induced by Stxs or by the fungal RNase α-sarcin trigger the activation of the stress-activated protein kinases (Jun N-terminal kinase and p38 mitogen-activated protein [MAP]), which are implicated in the upregulation of genes related to apoptosis or to the stress response (
12,
29). α-Sarcin and Stxs share many properties since they inactivate the ribosomal 60S subunit by targeting 28S rRNA in the same highly conserved region involved in the interaction of ribosomes with elongation factors (
6,
7). In contrast, the mechanism of action is quite different, since α-sarcin is an RNase that splits a single fragment from 28S rRNA (
7). In ribosomes, the site of RNA cleavage and that of
N-glycosylic depurination are at one nucleotide distance.
Here we investigated the time course of protein synthesis inhibition, damage to nuclear DNA, and induction of proinflammatory molecules in human umbilical vein endothelial cells (HUVEC) exposed to Stx1, Stx2 and, as a positive control, the fungal toxin α-sarcin. The latter was included in the study as a ribotoxin acting with a different mechanism of action on the same ribosomal sequence targeted by Shiga toxins. The experiments were designed to further our understanding of the molecular bases of the gene upregulation induced by Stxs and the differences in action between Stx1 and Stx2 on whole cells.
MATERIALS AND METHODS
Reagents.
The prototype Stx1 and Stx2 producers
E. coli C600 (H19J) and C600 (933W) were kindly supplied by Alison O'Brien (Department of Microbiology and Immunology, Uniformed Services University of the Health Sciences, Bethesda, MD). Stx1 was purified by receptor analogue affinity chromatography (
25) on globotriose-Fractogel (IsoSep AB, Lund, Sweden). Stx2 was obtained according to the method described by Downes et al. (
5).
l-[4,5-
3H]leucine (64 mCi/mmol, 1 μCi/ml) was obtained from Amersham Pharmacia Biotech (Bucks, United Kingdom). Disposable plastics for laboratory use were obtained from Costar (Broadway, Cambridge, MA). α-Sarcin and analytical-grade reagents were purchased from Sigma Chemical Co. (St. Louis, MO).
Cell cultures.
HUVEC cultures (
15) were kindly provided by Janette A. M. Maier (University of Milan, Milan, Italy). HUVEC were cultured as previously described (
3). The cells used in the present study were all of early passages and were checked for the expression of von Willebrand factor by immunocytochemistry using a rabbit anti-human von Willebrand factor (Dako, Milan, Italy) as the primary antibody.
Determination of protein synthesis.
Protein synthesis was measured as the rate of incorporation of labeled leucine during a 30-min incubation of the cell monolayers in the complete medium described above containing 0.4 mM leucine and trace amounts of [
3H]leucine. This procedure has been described in detail elsewhere (
24).
Damage to DNA measured by the fast halo assay.
The fast halo assay was carried out as described previously (
28). Briefly, after the treatments, the cells were resuspended at 4.0 × 10
4/100 μl in ice-cold phosphate-buffered saline (8 g of NaCl, 1.15 g of Na
2HPO
4, 0.2 g of KH
2PO
4, and 0.2 g of KCl per liter) containing 5 mM EDTA: this cell suspension was diluted with an equal volume of 2.0% low-melting-point agarose in phosphate-buffered saline and immediately sandwiched between an agarose-coated slide and a coverslip. After complete gelling on ice, the coverslips were removed, and the slides were immersed in 0.3 M NaOH for 15 min at room temperature. Ethidium bromide (10 μg/ml) was directly added to NaOH during the last 5 min of incubation. The slides were then washed and destained for 5 min in distilled water. The ethidium bromide-labeled DNA was visualized by using a Leica DMLB/DFC300F fluorescence microscope (Leica Microsystems, Wetzlar, Germany), and the resulting images were digitally recorded on a PC and processed with an image analysis software (Scion Image). The extent of strand scission was quantified by calculating the nuclear diffusion factor (NDF), which represents the ratio between the total area of the halo plus nucleus and that of the nucleus. The data are expressed as relative NDF values (rNDF), calculated by subtracting the NDF value of control cells from that of treated cells.
Adenine release from DNA in vitro.
Adenine release from DNA was measured by using as substrate the 2,251-bp [
3H]DNA labeled in the purine ring of adenine obtained by PCR amplification of the 731-2981 region of the pBR322 plasmid (
2). Enzymatic reactions were performed in 150 μl of 50 mM sodium acetate buffer (pH 4) containing 0.3 μg of substrate corresponding to 205.5 pmol of adenine having a specific radioactivity of 3,000 dpm/pmol and 1 pmol of Stx1 or Stx2. After 40 min at the indicated temperatures, DNA molecules were removed by passing the samples through Bond Elut NH2 columns as previously described (
2), and the combined flowthrough and washing was measured by liquid scintillation counting.
Detection of caspase 3.
The assay we used for the detection of caspase 3 (Caspase Colorimetric assay kit; MBL International Corp., Watertown, MA) is based on the spectrophotometric detection of the chromophore
p-nitroanilide (
pNA) after cleavage from the labeled substrate DEVD-
pNA. The ratio between the absorbance of
pNA from the apoptotic sample and that from an untreated control gives the fold increase in caspase 3 activity (relative activity). The assay was performed as described earlier (
3).
p38 MAP kinase assay.
HUVEC cells from 6-cm-diameter tissue culture dishes were harvested by lysis using the p38 MAP kinase assay kit (Cell Signaling Technology, Inc., Danvers, MA) according to the directions of the manufacturer. The assay was performed on 200 μg of protein extracts, to which immobilized monoclonal antibody specific for phosphorylated p38 MAP kinase was added. After an overnight incubation at 4°C, immunoprecipitates were repeatedly washed with the lysis buffer and with the kinase buffer supplied in the kit and then resuspended in 50 μl of the latter solution supplemented with 200 μM ATP and 1 μg of the kinase substrate ATF-2 fusion protein. Kinase reaction mixtures were incubated for 30 min at 30°C, and then the reaction was terminated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis sample buffer. ATF-2 phosphorylation was detected by Western blotting with the phospho-ATF-2 specific (Thr71) antibody.
IL-8 and GM-CSF enzyme-linked immunosorbent assay (ELISA).
IL- 8 and GM-CSF proteins present in culture supernatants from control and toxin-treated cells were quantified by enzyme immunoassay using standards ranging from 31.25 to 2,000 pg/ml and from 7.8 to 500 pg/ml, respectively, according to the manufacturer's instructions (Quantikine human IL-8 and human GM-CSF immunoassay; R&D Systems, Inc., Minneapolis, MN).
RESULTS
Ribotoxic activity of Stxs and α-sarcin.
In Fig.
1 the rate of protein synthesis in HUVEC treated with the two bacterial toxins (0.01 nM) was measured and compared to that obtained after incubation of the same cells with the fungal ribotoxin α-sarcin (10 μM) acting on the same rRNA sequence. A relatively high concentration of α-sarcin was used in these experiments, because it lacks a specific receptor and slowly enters the cells by endocytosis through acidic endosomes (
1). With both Stxs the inhibition of protein synthesis started early (90 min) and reached a plateau value approaching 80% within 6 h. It is of note that the maximal level and the time course of the antiribosomal activity of Stx1 and Stx2 essentially coincided. In the case of α-sarcin the inhibition of translation progressively increased over 16 h of incubation, reflecting a slow, non-receptor-mediated internalization, and finally reached a plateau equal to 70%.
Effect of Stxs and α-sarcin on nuclear HUVEC DNA.
Since Stx1, in addition to depurinating 28S rRNA within ribosomes, has been shown to remove adenines from nuclear DNA in HUVEC (
3), the closely related Stx2 was checked for the capacity to damage DNA. The effect of the toxins on nuclear DNA was studied by means of the fast alkaline halo assay (
27,
28). With this technique, DNA fragments resulting from the cleavage of DNA itself diffuse out of the nuclear cage as an inverse function of their size, thus producing a concentric halo whose radius reflects the extent of DNA damage (Fig.
2): i.e., on microscopic observation (i) the smaller the fragments (highly damaged DNA) the greater the halo and (ii) the longer the fragment (intact DNA) the smaller the halo. It should be noted that the single-stranded DNA fragments may result from a direct breakage of DNA or from the presence of apurinic sites converted to DNA single-strand breaks at alkaline pH. Halo formation can be conveniently monitored at the single cell level with fluorescence microscopy, as seen in the representative micrographs shown in Fig.
2. As expected (
3), Stx1-treated cells, unlike control cells (Fig.
2A), showed well-defined halos (Fig.
2B) indicative of DNA breakage. More interestingly, the same phenomenon was observed in Stx2-intoxicated cells (Fig.
2C). Consistently, both bacterial toxins in vitro depurinated at similar rates a [
3H]DNA labeled in the purine ring of adenine (Table
1). To our knowledge, this is the first evidence that Stx2 damages nuclear DNA in human vascular endothelial cells: hence, both Stx1 and Stx2 could be considered
N-glycosylases with broad substrate specificity, since the two ribotoxins remove the same single specific adenine from rRNA (
6) and multiple adenines from nuclear DNA. The induction of nuclear damage as a function of intoxication time has also been studied (Fig.
1): Stx2 demonstrated a steady but steep increase over the 6 h, whereas Stx1 is slow to start in the first 3 h and then had a steep increase in the second 3 h. After 6 h, however, the difference between the amount of DNA lesions accumulated in Stx1-intoxicated HUVEC {rNDF [expressed as the mean ± the standard error of the mean (SEM)], 4.2 ± 0.77} and in Stx2-treated cells (rNDF, 3.1 ± 0.59) was not statistically significant (Fig.
1). α-Sarcin had no effect on nuclear DNA (Fig.
2D and Fig.
1) even after prolonged incubation (40 h). This finding leads to the conclusion that damage to nuclear DNA observed with Stxs is independent from their ribotoxic activity since α-sarcin induced similar ribosomal lesions in the absence of primary DNA damage. Accordingly, Olmo et al. did not show any direct DNA damage in rhabdomyosarcoma cells exposed to the fungal toxin, whereas internucleosomal DNA fragmentation secondary to apoptosis has been shown to occur in these cells (
22). However, the latter finding was not observed in α-sarcin-treated HUVEC (not shown) which, consistently, barely activated caspase 3 (Fig.
1) and showed a very low apoptotic response. It is not surprising that very different cell types (tumor cells and endothelial cells) might respond differently to the same stimulus. Thus, α-sarcin should be considered a pure ribotoxin targeting uniquely ribosomes sparing DNA. It was therefore used as a tool to assess the effects induced on gene expression by ribotoxic stress (see below and Fig.
4 and
5) in the absence of any direct effect on the nucleus.
DNA lesions induced in HUVEC by Stxs are the result of a direct action of the toxins and are not secondary to the onset of apoptosis: indeed, Fig.
1 also shows that the DNA breaks appeared before the onset of the execution phase of apoptosis (as assayed with caspase 3 activation). As previously described (
3), with Stx1 the caspase activity increased ∼3-fold after 16 h of treatment, i.e., more than 10 h after the maximum nuclear damage observed. With Stx2, the same threefold increase in caspase 3 activity occurred about 3 h after the onset of detectable DNA injuries. Notably, the kinetics of Stx-induced DNA damage are similar to the kinetics of caspase activation offset by 3 h (Fig.
1). This is not unexpected since Stx2 induces DNA lesions (which are known to be an apoptogenic stimulus) with more rapid kinetics than does Stx1. Moreover, Stx2, in contrast to Stx1, has been found to interact with mitochondrial Bcl-2, resulting in faster caspase 3 activation (
30). As for α-sarcin, which is not DNA damaging (Fig.
1 and
2), it is noteworthy that the strong inhibition of translation induced by the fungal toxin acting on the same crucial sequence of rRNA targeted by Stxs was not sufficient per se to trigger the sustained activation of caspase 3 in the absence of DNA damage.
Time course of stress kinase activation in toxin-treated HUVEC.
The response of HUVEC to toxin-induced stress was evaluated by monitoring the time course of the phosphorylation of ATF-2 fusion protein by p38 MAP kinase (Fig.
3A). It is well known that stress activated protein kinases are activated by specific ribosomal lesions (
12,
29); accordingly, the pure ribotoxin α-sarcin triggered p38 MAP kinase activity in HUVEC in the absence of DNA damage. Moreover, the activation of the protein kinase clearly paralleled the inhibition of protein synthesis (Fig.
1) starting after 3 h of treatment, i.e., when protein synthesis in HUVEC was markedly inhibited by the two bacterial toxins (>50%, Fig.
1). In the case of α-sarcin the delayed inhibition of protein synthesis was accompanied by a delayed (6 h) and transient activation of p38 MAP kinase, declining at 24 h. Quantitative analysis of the immunoblot results by densitometric scanning showed differences between the two bacterial toxins in activating p38 MAP kinase, since phospho-ATF-2 levels are significantly higher in Stx1-treated cells at 3 and 6 h (Fig.
3B). Since protein synthesis was equally inhibited by the two bacterial toxins (Fig.
1), these differences probably reflect diverse mechanisms of binding to the substrate rather than different levels of 28S rRNA damage. It is well known that some antibiotics are capable of activating stress kinase response by binding to 28S rRNA (
12).
Gene upregulating effects on toxin-treated HUVEC.
All of the toxins tested on HUVEC under the conditions described above caused the induction of IL-8, a key chemokine in HUS pathogenesis, at times subsequent to p38 MAP kinase activation. As shown in Fig.
4, the ELISA determinations performed on the culture supernatants were negative at 6 h, whereas the chemokine release was detectable after 12 h and peaked at 24 h. There was a significant difference between the two bacterial toxins (Stx2 > Stx1) in the induction of IL-8 at 24 h.
When the same culture supernatants were checked for the presence of GM-CSF (Fig.
5), the release of the cytokine was found only with Stx2, as previously demonstrated by Matussek et al. (
16), whereas Stx1 and α-sarcin were apparently ineffective. Again, the time course of GM-CSF induction by Stx2 clearly paralleled that observed with IL-8. Since GM-CSF was undetectable in control cells, we hypothesized the existence of a masked stimulation with Stx1 and α-sarcin at just detectable values of GM-CSF. At lower concentrations of Stxs (2 pM), the extent of ribosomal lesions in HUVEC was lower, protein synthesis was only 50% inhibited, and IL-8 and GM-CSF inductions were more pronounced (Table
2). Under these conditions, Stx1-treated HUVEC secreted detectable amounts of GM-CSF. Again, Stx2 clearly had stronger effects on gene expression than did Stx1, since the total amounts of cytokines induced by this toxin are twofold (IL-8) or fourfold (GM-CSF) higher than those secreted in the presence of Stx1. The results show that the same level of ribotoxic stress imposed by Stx1 or Stx2 (Fig.
1 and Table
2) led to quite different levels of gene expression (Fig.
4, Fig.
5, and Table
2). These findings cannot be accounted for solely in terms of pure inhibition of protein synthesis or MAP kinase activation. A further regulation independent from the ribotoxic stress was assumed to be operative in intoxicated cells. It should be noted that, although DNA lesions were in both cases delayed compared to RNA lesions (Fig.
1), they emerged before the upregulating effects triggered by Stxs (Fig.
4 and
5).
DISCUSSION
A breakthrough in HUS pathophysiology was the discovery that the treatment of intestinal or endothelial cells with both Stx1 and Stx2 leads to the upregulation of a few genes encoding proinflammatory molecules involved in HUS pathogenesis (
16,
32,
38). Stx2 has stronger upregulating effects than Stx1, and this is consistent with the epidemiologic association between Stx2-producing
E. coli strains and HUS. In our study, we selected IL-8 and GM-CSF as representative cytokines to study the relationship between their induction and the molecular damage induced by Stxs in human endothelial cells. The important role of IL-8 in HUS is supported by several observations. First, elevated levels of IL-8, a powerful selective activator and chemoattractant of polymorphonuclear leukocytes, have been found in the plasma of HUS patients (
8). Second, patients suffering from HUS often have elevated neutrophil counts (
35). Finally, an increased number of neutrophils was observed in autopsy material of patients with HUS (
11,
17). This also confirms the role of GM-CSF, a colony-stimulating factor that induces the maturation and differentiation of hematopoietic cells into granulocytes, monocytes, and erythrocytes.
Full expression of a gene requires not only that some signal must be present in the nucleus to indicate the need for transcription but also that the resulting mRNA is translated into a protein sequence. In the present study we investigated the upregulation of IL-8 and GM-CSF by Stxs at the protein level, extending the data to the fungal toxin α-sarcin.
The results obtained in HUVEC treated with the above-mentioned toxins can be summarized as follows. (i) The three toxins are ribotoxic but only Stxs are DNA damaging. (ii) Stress kinase activation paralleled the ribotoxic stress induced either by bacterial and fungal toxins. (iii) The ribotoxin α-sarcin, devoid of activity on DNA, was fully effective in the induction of IL-8 protein. (iv) Gene upregulation events induced by Stx2 were much more efficient than those triggered by Stx1. The first conclusion is that damage to 28S rRNA is indispensable and sufficient to induce gene upregulation. This is in keeping with the notion that MAP kinase inhibitors significantly block soluble IL-8 production induced by Stx1 in cultured cells (
4).
To induce gene expression at the protein level by toxins inhibiting translation, a balance needs to be reached between the ribotoxic stress that activates transcription via induction of the stress kinase cascade and the inhibition of protein synthesis that, eventually, would impair the expression. We therefore investigated the relationship between the level of translation inhibition and the changes in gene expression induced by the two bacterial toxins. It should be noted that Stx1 and Stx2 remove the same single adenine residue within 28S rRNA, causing structural lesions on ribosomes and functional impairments on protein synthesis that are indistinguishable. However, we observed differential gene upregulation under conditions that induced identical impairments of translation (Fig.
1 and Table
2) and overlapping time courses of ribotoxic stress (Fig.
1). The second conclusion is that further regulations independent of the ribotoxic stress are operative in intoxicated cells. The modulation apparently did not occur at the level of p38 MAP kinase activation, since Stx1, having lower upregulating effects, was more efficient than Stx2 in triggering the stress kinase response (Fig.
3B).
Nonenzymatic Stx-dependent regulation might occur through direct binding of the internalized toxins to proteins involved in the signal transduction from the 28S rRNA damage to the nucleus. On the other hand, the presence of DNA lesions compatible with the enzymatic activity of Stxs in toxin-treated cells may be considered evidence for the presence of the bacterial toxins in the nucleus. Irrespective of the enzymatic depurination, the binding of Stxs to diverse DNA sequences or to different regulatory proteins in the nucleus might help explain the differential expression of cytokines induced by the two toxins.
Evidence for enzymatic nuclear DNA damage in human endothelial cells has been described previously for Stx1 (
3) and in the present study for Stx2. The lesions are independent of the activation of the apoptotic program and appeared several hours before the gene-upregulating events (Fig.
1). The two bacterial toxins differed in triggering the DNA injuries, since those induced by Stx2 emerged faster, and it is likely that they also contributed to a faster execution of the apoptotic program, as suggested by the very rapid caspase 3 activation in Stx2-intoxicated cells. In addition to its role in the induction of cell death, the depurination of DNA may be involved in more subtle effects at the cellular level. Selective removal of crucial adenine residues occurring in critical DNA sequences might induce alterations in gene expression and regulation. The two bacterial toxins could recognize different DNA sequences inducing differential gene upregulating effects. A validation of this hypothesis awaits the identification of DNA recognition sequences for both Stxs and the location of the targeted genes.
Acknowledgments
This study was supported by the University of Bologna (RFO funds) and COFIN 2004 (M.B. and P.S.).