Cloning of the spoT Gene of “CandidatusPhlomobacter fragariae” and Development of a PCR-Restriction Fragment Length Polymorphism Assay for Detection of the Bacterium in Insects
ABSTRACT
MATERIALS AND METHODS
Plant materials and greenhouse conditions.
Insect collection.
DNA extraction.
RAPD amplification.
Cloning and sequence analysis.
PCR test and enzymatic digestion.
Nucleotide sequence accession number.
RESULTS
Random amplification and cloning of the “P. fragariae”spoT gene.


spoT-PCR and RFLPs on field-collected homopteran insects.
Insect species | No. of positive batches/total no. of batches | No. of insects captured |
---|---|---|
Suborder Fulgoromorpha | ||
Cixius pallipes (Fieber, 1876), Asiraca clavicornis(Fabricius, 1794) | 0/4 | 4 |
Conomelus anceps (Germar, 1821) | 4/29 | 155 |
Laodelphax striatellus (Fallen, 1826) | 20/73 | 370 |
Delphacidae sp. (Leach, 1815) | 5/47 | 187 |
Suborder Cicadomorpha | ||
FamilyCercopidae: Aphrophora alni (Fallen, 1805),Phileanus spummarius (Linnaeus, 1758),Neophileanus sp. (Haupt, 1935), Cercopidae sp. (Leach, 1815); family Membracidae: Stictocephala bisonia (Kopp and Yonke, 1977), Membracidae sp. (Rafinesque, 1815) | 0/15 | 16 |
FamilyCicadellidae | ||
Subfamily Aphrodinae:Aphrodes sp. (Curtis, 1833), Aphrodes bicincta(Schrank, 1776), Aphrodes albifrons (Linnaeus, 1758),Anoscopus serratulae (Fabricius, 1775) | 0/10 | 13 |
Subfamily Agallinae: Agallia consobrina (Curtis, 1833), Anaceratagallia ribautii(Ossiannilsson, 1938), Anaceratagallia laevis (Ribaut, 1935), Anaceratagallia sp. (Zachvatkin, 1946) | 0/20 | 34 |
Subfamily Cicadellinae: Cicadella viridis (Linnaeus, 1758) | 0/78 | 79 |
SubfamilyDeltocephalinae: Allygidius atomarius (Fabricius, 1794), Conosanus obsoletus (Kirchbaum, 1858), Doratura homophila (Flor, 1861), Arthaldeus striifrons(Kirchbaum, 1868) | 0/42 | 101 |
Balclutha punctata (Fabricius, 1775) | 1/50 | 119 |
Errastunus ocellaris (Fallen, 1806),Errastunus sp. (Ribaut, 1947), Euscelidius variegatus (Kirchbaum, 1858), Euscelis sp. (BRULLE, 1932), Euscelis lineolatus (Brulle, 1832),Goniagnathus brevis (Herrich-Schäffer, 1835),Jassargus sp. (Zachvatkin, 1953) | 0/77 | 279 |
Euscelis incisus (Kirchbaum, 1858) | 0/109 | 214 |
Macrosteles sp. (Fieber, 1866), Macrosteles sexnotatus (Fallen, 1806),Macrosteles viridigriseus (Edwards, 1922), Macrosteles quadripunctulatus (Kirchbaum, 1868) | 170/350 | 1,024 |
Macrosteles laevis (Ribaut, 1927) | 8/67 | 207 |
Mocydia crocea(Herrich-Schäffer, 1837) | 3/7 | 10 |
Mocydiopsis parvicauda (Ribaut, 1939),Neoaliturus fenestratus (Herrich-Schäffer, 1834),Psammotettix alienus (Dahlbom, 1850),Psammotettix sp. (Haupt, 1929), Recilia sp. (Edwards, 1922), Rhopalopyx sp. (Ribaut, 1939),Sardius argus (Marshall, 1866), Streptanus sordidus (Zetterstedt, 1828), Thamnotettix dilutor(Kirchbaum, 1868), Thamnotettix confinis (Zetterstedt, 1828) | 0/60 | 171 |
Psammotettix confinis(Dahlbom, 1850) | 5/265 | 1,001 |
SubfamilyDorycephalinae: Eupelix cuspidata (Fabricius, 1775); subfamily Typhlocybinae: Empoasca vitis(Gothe, 1875), Zyginidia sp. (Haupt, 1929), Eupterix aurata (Linnaeus, 1758), Zyginidia scutellaris(Herrich-Schäffer, 1838), Typhlocybinae sp. (Kirschbaum, 1868) | 0/97 | 434 |
SuborderSternorrhyncha | ||
Family Psyllidae:Trioza urticae (L.) | 1/25 | 76 |
FamilyAleyrodidae: Trialeurodes vaporariorum | ||
Batch of >35 | 47/56 | 3,065 |
Batch of 15 | 0/3 | 45 |
Batch of 1 | 0/10 | 10 |

Restriction enzyme | Sizes (bp) of restriction fragment | ||||
---|---|---|---|---|---|
“P. fragariae” | Type Ia | Type IIb | Type IIIc | Type IVd | |
RsaI | 576, 270, 49 | 270, MSFe | 895 | 576, 243, 76 | 895 |
AluI | 474, 371, 50 | 895 | 371, MSF | NDf | 524, 371 |
Detection and identification of “Candidatus P. fragariae” in T. vaporariorum whiteflies proliferating on “Candidatus P. fragariae”-infected strawberry plants.

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