All functions described so far for the MCMV IE3 protein have been deduced from data that were obtained with transient transfection experiments (
24). To examine the function of IE3 during the replication cycle of MCMV, we generated MCMV mutants with a deletion in the IE3 ORF. Construction of the mutant genomes was performed by using the recently established BAC mutagenesis procedure (
25,
34). The MCMV BAC plasmid pSM3fr (
34; Fig.
1, line 1) represents the parental genome that was used to construct the
ie3 deletion genomes. pSM3fr contains the complete MCMV genome cloned into a BAC vector. After transfection into permissive cells, it gives rise to recombinant MCMV whose growth properties are indistinguishable from wild-type (wt) MCMV (
34). In order to disrupt the IE3 ORF, a 1.4-kbp deletion was introduced into the cloned MCMV genome by making use of the recombination procedures in
E. coli as described in Materials and Methods. The deletion (nt 178,117 to 179,510 of the MCMV genome [
30]) removed almost entirely the fifth exon of the MCMV
ie1/
ie3 transcription unit (see Fig.
1, line 2). Thus, the MCMV genome of BAC plasmid pSM3frdie3 was unable to encode the IE3 protein. The position of the deletion in the BAC plasmid pSM3frdie3 was tagged with a
HindIII restriction enzyme site (Fig.
1, line 2) in order to facilitate the characterization of the mutant genome. In a second step, the green fluorescent protein (GFP) reporter gene under control of the HCMV MIEP was introduced into the
ie3-deficient genome, resulting in BAC plasmid pSM3frdie3::GFP (Fig.
1, line 3). The GFP expression cassette was inserted in front of the
ie2 gene (
26) since it was previously shown that foreign genes can be inserted at this location without affecting the growth of the recombinant MCMV (
23). Insertion of the GFP gene was performed with the intention to follow replication of the
ie3-deficient genome in transfected cells by monitoring GFP expression. Finally, we generated a revertant genome by restoring the IE3 ORF. The revertant genome pSM3fr-rev was made to test whether the phenotype of the
ie3 knock-out mutants was caused solely by disruption of the
ie3 gene. The revertant genome also contained the GFP gene and could therefore be distinguished from the genome of the parental virus (Fig.
1, compare lines 1 and 4).
The structure of the BAC plasmids was analyzed by digestion of plasmid DNA with restriction enzyme
HindIII followed by agarose gel electrophoresis (Fig.
2). The 7.6-kbp
HindIII K fragment of the parental BAC plasmid pSM3fr was missing in the BAC plasmid pSM3frdie3 and was replaced by two new fragments of 1.2 and 4.9 kbp (Fig.
1, lines 1 and 2; Fig.
2, compare lanes 1 and 2). Insertion of the GFP expression cassette in BAC plasmid pSM3frdie3::GFP resulted in a shift of the 7.2-kbp
HindIII L fragment to a new fragment of 8.8 kbp (Fig.
1, lines 2 and 3). Hence, the 7.2-kbp
HindIII fragment disappeared in the DNA of BAC plasmid pSM3frdie3::GFP, and a new band of 8.8 kbp was observed (Fig.
2, lane 3). Restoration of the
ie3 gene led to the reappearance of the 7.6-kbp
HindIII K fragment in the revertant BAC plasmid pSM3fr-rev (Fig.
2, lane 4). Additional characterization of the
ie3-deficient BAC plasmids was performed by digestion with restriction enzymes
EcoRI and
NsiI. The observed DNA patterns of the BAC plasmids were as expected (data not shown). These results show that the intended modifications were introduced in the MCMV BAC plasmids and that no adventitious deletions or rearrangements could be detected anywhere else in the cloned genomes.