Identification and Characterization of a New Prespore-Specific Regulatory Gene, rsfA, ofBacillus subtilis
ABSTRACT
MATERIALS AND METHODS
Bacterial strains.
Strain or plasmid | Relevant genotypea | Construction, source, or referenceb |
---|---|---|
Strains | ||
168 | trpC2 | Laboratory stock |
36.3 | trpC2 spoIIIE36 | 12 |
BFA1335 | trpC2 rsfA::pMUTIN4-′rsfA′ | Gene Function Analysis Strain Collection |
BFA3241 | trpC2 ylbO::pMUTIN4-′ylbO′ | Gene Function Analysis Strain Collection |
BS5:JH642 | trpC2 pheA1 amyE::spoIIQ-lacZ cat | 22 |
IB427 | katX::katX-lacZ cat | 2 |
MO2029 | trpC2 pheA1 amyE::spoIIR-lacZ cat | 23 |
PS943 | spoIIIGΔ1 amyE::spoIIIG-lacZ cat | P. Setlow, unpublished data |
PS1287 | amyE::sspE-2G-lacZ cat | 31 |
1.5 | trpC2 spoIIAC1 | 10 |
168 (pDG298) | trpC2(pDG298) Pspac-spoIIIG kan | 32 |
735 | trpC2 spoIIAC::pSG635 (lacI Pspac-spoIIAC kan) | S. R. Partridge, unpublished data |
901 | trpC2 spoIIGA::aphA3 | 35 |
1224 | trpC2Δ(ywhD-rsfA)::(′neo tet) | Materials and Methods |
1225 | trpC2 ΔrsfA::tet | Materials and Methods |
1226 | trpC2 rsfA::pMUTIN4-′rsfA′ spoIIAC1.5 | BFA1335 (chr)→1.5 |
1227 | trpC2 rsfA::pMUTIN4-′rsfA′ spoIIGA::aphA3 | BFA1335 (chr)→901 |
1228 | trpC2 rsfA::pMUTIN4-′rsfA′ spoIIIG::aphA3 | BFA1335 (chr)→1248 |
1229 | trpC2 rsfA::pMUTIN4-′rsfA′ spoIIAC::pSG635 (lacI Pspac-spoIIAC kan) | 735 (chr)→BFA1335 |
1230 | trpC2 rsfA::pMUTIN4-′rsfA′ (pDG298)Pspac-spoIIIG kan | 168 (pDG298)→BFA1335 |
1231 | trpC2 ΔrsfA::tet spoIIIG::aphA3 | 1248 (chr)→1225 |
1232 | trpC2 ΔrsfA::tet spoIIIG::aphA3 amyE::spoIIR-lacZ cat | MO2029 (chr)→1231 |
1233 | trpC2 ΔrsfA::tet spoIIIG::aphA3 amyE::spoIIQ-lacZ cat | BS5:JH642 (chr)→1231 |
1234 | trpC2 ΔrsfA::tet spoIIIG::aphA3 katX::katX-lacZ cat | IB427 (chr)→1231 |
1235 | trpC2 ΔrsfA::tet spoIIIG::aphA3 amyE::spoIIIG-lacZ cat | PS943 (chr)→1231 |
1236 | trpC2 ΔrsfA::tet spoIIIG::aphA3 amyE::sspE-2G-lacZ cat | PS1287 (chr)→1231 |
1237 | trpC2 ΔrsfA::tet amyE::(rsfA+ neo) | Materials and Methods |
1239 | trpC2 rsfA::pMUTIN4-′rsfA′ amyE::(rsfA+ neo) | 1237 (chr)→BFA1335 |
1241 | trpC2 amyE::Pxyl-rsfA cat | pSG4907→168 |
1242 | trpC2 rsfA::pSG4904 (rsfA-gfp cat) | pSG4904→168 |
1243 | trpC2 spoIIIG::aphA3 amyE::spoIIR-lacZ cat | MO2029 (chr)→1248 |
1244 | trpC2 spoIIIG::aphA3 amyE::spoIIQ-lacZ cat | BS5:JH642 (chr)→1248 |
1245 | trpC2 spoIIIG::aphA3 katX::katX-lacZ cat | IB427 (chr)→1248 |
1246 | trpC2 spoIIIG::aphA3 amyE::spoIIIG-lacZ cat | PS943 (chr)→1248 |
1247 | trpC2 spoIIIG::aphA3 amyE::sspE-2G-lacZ cat | PS1287 (chr)→1248 |
1248 | trpC2 spoIIIG::aphA3 | D. Foulger, unpublished data |
1249 | trpC2 amyE::gpr-lacZ cat | pPS1326→168 |
1250 | trpC2 amyE::gpr-lacZ cat ΔrsfA::tet | 1225 (chr)→1249 |
1251 | trpC2 amyE::Pgpr-gfp cat | pSG4908→168 |
1252 | trpC2 amyE::Pgpr-gfp cat spoIIAC::pSG635 (lacI Pspac-spoIIAC kan) | 735 (chr)→1251 |
1253 | trpC2 rsfA::pSG4904 (rsfA-gfp cat) spoIIAC::pSG635 (lacI Pspac-spoIIAC kan) | 735 (chr)→1242 |
1254 | trpC2 spoIIIE36 rsfA::pSG4904 (rsfA-gfp cat) | pSG4904→36.3 |
1255 | trpC2 ylbO::pMUTIN4-′ylbO′ spoIIAC1 | BFA3241 (chr)→1.5 |
1256 | trpC2 ylbO::pMUTIN4-′ylbO′ spoIIGA::aphA3 | BFA3241 (chr)→901 |
Plasmids | ||
pBEST309 | bla tet | 13 |
pBEST502 | bla neo | 14 |
pJPR1 | bla amyE′ cat Pxyl ′amyE | J. Rawlins, unpublished data |
pMLK83 | bla amyE′ neo gusA ′amyE | 17 |
pPS1326 | gpr-lacZ in ptrpBG1 | 31 |
pRD154 | bla amyE′ ′amyE | R. Daniel, unpublished data |
pSG635 | bla kan lacI Pspac-spoIIAC | 26 |
pSG4903 | bla amyE′ neo ′amyE | neo from pMLK83 (XbalI+NotI)→pRD154 (SpeI+NotI) |
pSG1151 | bla gfp cat | 20 |
PSG1154 | bla amyE′ spc Pxyl-gfp ′amyE | 20 |
pSG4904 | bla ′rsfA-gfp cat | ′rsfA (PCR,XhoI+EcoRI)→pSG1151 (XhoI+EcoRI) |
pSG4905 | bla ′neo | pBEST502 (Bsp120I+NotI) religated |
pSG4906 | bla 'neo tet | tet from pBEST309 (NotI)→pSG4905 (NotI) |
pSG4907 | bla amyE′ cat Pxyl-rsfA ′amyE | rsfA (PCR,EcoRI+SpeI)→pJPR1 (EcoRI+SpeI) |
pSG4908 | bla amyE′ Pgpr-gfp cat ′amyE | cat Pgpr of pPS1326 (SalI+HindIII)→pSG1154 (SalI+HindIII) |
General methods.
PCR primers.
Construction of the deletion strains 1224 [Δ(ywhD-rsfA)] and 1225 (ΔrsfA) by double-crossover homologous recombination.
Identification of the gene responsible for the phenotype of the deletion in strain 1224.
Insertion of rsfA at amyE.
Induction of sporulation.
Induction of sigma factors during vegetative growth.
Assay for β-galactosidase activity.
Live cell fluorescence microscopy.
RESULTS
Identification of the rsfA gene.


The expression of rsfA is prespore specific and is dependent on both ςF and ςG.


Effects of an rsfA null mutation on prespore-specific gene expression.

Negative autoregulation of rsfA expression.
An RsfA-GFP fusion colocalizes with chromosomal DNA.

The ylbO gene encodes a protein with a high degree of similarity to RsfA.


DISCUSSION
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