The acyl coenzyme A (CoA) binding protein (ACBP) has been well characterized for its role in intracellular lipid trafficking, but it also serves as the precursor of peptides that function as intercellular signals. ACBPs are involved in the transport and metabolism of long-chain acyl-CoA esters and steroid biosynthesis (
15,
16,
32). In the mammalian brain ACBP is also secreted and processed to generate a diazepam binding inhibitor (DBI) peptide that regulates γ-aminobutyric acid A (GABA
A) ionotropic receptors in neurons (
12). Qian and colleagues recently demonstrated the secretion of ACBP from Muller glial cells of the retina (
36). In
Dictyostelium discoideum the ACBP homolog AcbA is secreted and processed extracellularly into spore differentiation factor 2 (SDF-2), a 34-amino-acid peptide that is highly similar to DBI (
2). However, neither ACBP nor AcbA carries a signal sequence that is necessary for entering the endoplasmic reticulum/Golgi pathway. Alternative, unconventional pathways for the secretion of proteins, including ACBPs, have been proposed over the past 20 years, involving the direct membrane transport of proteins, novel membrane trafficking, or autophagy (
29,
39).
An understanding of the regulation of SDF-2 signaling is now emerging. During culmination, prespore cells respond to a steroid signal by rapidly releasing GABA, which binds to the GABA
B-like receptor GrlE and stimulates a signal transduction pathway leading to the release of AcbA by prespore cells (
3,
5). AcbA is processed into SDF-2 by TagC protease, which is displayed on the surface of prestalk cells in response to GABA. The 34-amino-acid peptide SDF-2 binds to the receptor histidine kinase DhkA, leading to elevated levels of intracellular cyclic AMP (cAMP), which induces spore encapsulation (
2,
47). Low levels of SDF-2 also trigger the release of additional AcbA proteins, forming a positive-feedback loop (
2,
6). Although only 1 to 3% of the total AcbA is secreted, the levels of SDF-2 in the sorus are far above that required to rapidly induce sporulation (
5,
19).
The release of AcbA is a critical step in this cascade, but the mechanism of its secretion is largely unknown. The Golgi-associated protein GRASP (Golgi reassembly stacking protein) appears to play an essential role in the process since
grpA-null mutants lacking GRASP fail to produce SDF-2 (
19). To further explore the role of GRASP and understand the regulation of AcbA secretion, we have determined the subcellular localization of AcbA before and after stimulating its release. Secreted AcbA appears to be localized within membrane-bound vesicles, which accumulate in the cortex of prespore cells during culmination. When AcbA secretion is stimulated by GABA or SDF-2, the cortical vesicles containing AcbA are lost from wild-type cells but remain in cells lacking GRASP. It appears that GRASP is not involved in the production or positioning of AcbA within the cortical vesicles, but it is essential for events leading to their regulated release.
MATERIALS AND METHODS
Strain construction, cell growth, and development.
All strains were grown in HL-5 liquid medium supplemented with streptomycin (50 μg/ml) and penicillin (50 U/ml) (
20,
45). Those carrying the
cotB/lacZ construct were grown in medium supplemented with 20 μg/ml G418 (Geneticin; Gibco). Cells were grown in HL-5 medium without drugs for 36 h prior to the assay. Cells were plated for synchronous development on nitrocellulose filters as described previously (
45). Laboratory strain AX4, the
atg mutants, the
grpA− strain, the
acbA− strain, and the KP strain were previously described (
1,
2,
19,
20,
30,
31).
A point mutant of AcbA was generated by standard techniques to generate a tyrosine-to-alanine substitution at position 72 of the coding sequence. The modified coding sequence was cloned into
Escherichia coli and
Dictyostelium expression vectors as described previously for the wild-type gene (
2). Briefly, the mutant and wild-type proteins were expressed in
E. coli strain BL21(DE3) from the pET32a (Novagen) vector, affinity purified on nickel-conjugated beads (Talon), and cleaved from the protein tag with enterokinase. The mutant protein was also expressed in
Dictyostelium under the control of the actin 15 promoter in the pDNeo2 vector.
The transformation of
Dictyostelium cells was performed according to a method described previously by Manstein and Hunt by using a BTX 600 electroporation device (
26). Plasmid CS4 5.03 containing the NSFts2 gene was kindly provided by Mark Bretscher (MRC, Cambridge, United Kingdom). KP cells were transformed with 10 μg of plasmid DNA that was linearized with ScaI and selected with 10 μg/ml blasticidin S for 2 weeks. Individual clones were grown and tested for the replacement of
N-ethylmaleimide-sensitive factor (NSF) by the ts2 version on Southern blots as previously described (
46). The resulting KP/NSF
ts strain remained sporogenous at 22°C but failed to form spores when transferred to 30°C. The
acbA−[
act15/
acbAY72A] strain was made by the transformation of plasmid pDNeo2-
act15/
acbAY72A into an
acbA mutant described previously (
2).
SDF-1, SDF-2, and AcbA assays.
The bioassays for detecting SDF-1 and SDF-2 were carried out by using KP cells as previously described (
1). For the SDF-2 assay, 1 ml of exponentially growing KP cells was harvested by centrifugation at 2,000 ×
g, resuspended in 1 ml cAMP buffer (20 mM MES [morpholineethanesulfonic acid] [pH 6.2], 20 mM NaCl, 20 mM KCl, 1 mM MgSO
4, 1 mM CaCl
2, 5 mM cAMP), and counted. A total of 4.5 × 10
4 cells were diluted into 12.5 ml cAMP buffer. Aliquots of 500 μl of the cell suspension were incubated for 18 h at 23°C in the wells of a 24-well dish (1 × 10
3 cells/cm
2). Serial dilutions of samples were then added to the cells, and the numbers of spores and undifferentiated cells were counted 1 h later. A sample was considered positive if it caused the conversion of 40 to 50% of the cells into spores over the background level of sporulation. Samples were quantified by serial dilution, with 1 unit defined as the lowest dilution giving a full induction of spore formation, and units were normalized to 10
3 producing cells whenever applicable.
To test for SDF-2 release from the KP/NSF
ts strain, cells were plated and incubated for 18 h in the same way as described above for KP cells in the SDF-2 assay. To test for the release of SDF-2 from the KP/NSF
ts cells at the nonpermissive temperature, cells were incubated at either 22°C or 30°C for 30 min and then treated for 5 min with 0.1 pM SDF-2 or 1 nM GABA. Culture supernatants were harvested, and the levels of SDF-2 were then determined with fresh KP cells in a standard SDF-2 assay (
1).
The atg mutants have various developmental defects and do not develop synchronously on filters, so they were handled differently in order to assess SDF-1 and SDF-2 production and release. Mutant cultures were harvested from HL-5 medium and developed by plating 107 cells onto nonnutrient agar plates (2% Difco agar in PDF buffer) and incubating them at 22°C for at least 20 h. To account for asynchronous development, aggregates and slugs were removed from the agar plates with a needle by using a dissecting microscope, leaving mainly early culminants on the plate. The cells were monitored regularly and collected with a spatula when stalks became apparent under the nascent sori. The cells were resuspended in 1 ml cAMP buffer, centrifuged at 4,000 rpm for 1 min in a microcentrifuge, and resuspended in fresh cAMP buffer. After another round of washing, the cells were counted and plated at a density of 104 cells/cm2 in 24-well plates. The cells were then induced with either 1 pM SDF-2 peptide or 10 nM GABA, supernatants were recovered, and SDF-2 was purified and quantified on KP cells as described above. The atg1, atg5, and atg6 mutant cells develop too poorly to test for the induction of SDF-2 production from mid-culminant cells. The atg1 and atg6 mutant strains formed fruiting bodies very inefficiently, but these were individually collected with a needle for direct quantification of SDF-1 and SDF-2.
The acbA−[act15/acbAY72A] and acbA−[act15/acbA] strains were allowed to develop by plating 107 cells on nonnutrient agar plates at 22°C for 20 to 22 h. The cells were monitored regularly and collected at the early culminant stage, when stalks became apparent under the nascent sori. The cells were resuspended in 1 ml cAMP buffer, vortexed, centrifuged at 2,000 × g for 1 min, and resuspended in fresh cAMP buffer. After another round of washing, the cells were counted and plated at a density of 104 cells/cm2 in 24-well plates. The cells were then induced for 5 min with either 1 pM SDF-2 peptide or 10 nM GABA, supernatants (100 μl) were recovered, and the levels of SDF-2 were quantified.
Purified recombinant AcbA proteins were assayed for [
14C]palmitoyl-CoA binding as described previously (
2).
Immunostaining and fluorescence microscopy.
Immunostaining was carried out on cells fixed by using a two-step method described previously by Fukui et al. (
18). Cells were fixed with 2% formalin in 15 mM Na/K phosphate buffer (pH 6.5) at room temperature for 5 min, followed by a 5-min incubation at −10°C in 1% formaldehyde in methanol. Cells were washed in phosphate-buffered saline (PBS) and then sedimented onto slides by using a cytospin centrifuge (Cytopro 7620; Wescor) for 5 min at 2,000 rpm. The cells were then incubated in 100 μl of PBS containing 10 μg/ml bovine serum albumin (BSA) (PBS-BSA) with 1 μl of affinity-purified anti-AcbA rabbit polyclonal antibodies and/or various mouse monoclonal antibodies (
2). After overnight incubation at 4°C, the cells were washed three times in 100 μl PBS at 37°C (5 min each) and then incubated for 1 h at 37°C with fluorescein isothiocyanate (FITC)-conjugated goat anti-rabbit IgG and rhodamine red-conjugated goat anti-mouse IgG antibodies (Jackson ImmunoResearch Laboratories Inc.) at a 1:2,000 dilution in PBS-BSA. Prespore vesicles (PSVs) were stained with mouse monoclonal MUD102 primary antibody (1:500) (
48), followed by Alexa Fluor 594-conjugated goat anti-mouse IgM (Molecular Probes) as the secondary antibody. Stained cells were washed four times in 100 μl PBS at 37°C, with DAPI (4′,6-diamidino-2-phenylindole) included in the third wash.
Images were obtained with a Deltavision deconvolution system by using a Nikon Eclipse TE 200 inverted microscope with a 100× oil immersion objective. AcbA proteins were visualized by using an FITC-coupled antibody with the green filter set. Other proteins were visualized by using a rhodamine-coupled antibody with the red filter set. Images were deconvolved by using Softworks software, and images of single 1-μm optical sections were used for the figures.
To ensure that the immunofluorescent signals reported on the correct antigen, negative controls were carried out with all antibodies. In all cases, antibodies were tested under conditions that should result in an absence of a visible antigen signal, such as in the absence of primary antibody (all), neutralization of reactivity by incubation with the relevant peptide antigen (AcbA), or staining of a null mutant for the protein (AcbA). The residual staining observed for the AcbA-null mutant is likely due to cross-reactivity to the AcbB protein, the only other protein in Dictyostelium known to contain an acyl-CoA binding motif. All figures were derived from representative cells taken from multiple experiments with at least two biological samples that were always performed side-by-side with the requisite negative controls.
AcbA localization assay.
Cells were allowed to develop on filters until early culmination, typically between 20 and 22 h, and developing structures were then harvested and dissociated to single cells by passage through an 18-gauge needle. To test for changes in AcbA localization after the induction of SDF-2 production, cell suspensions were treated with 0.1 pM SDF-2 peptide or with 1 nM GABA for 5 min at room temperature before fixation and antibody staining. To quantify the localization of AcbA antigen to cortical puncta, at least 200 cells were scored for cells that displayed a “ring” of cortical AcbA staining. Each experiment was performed at least three times, and consistent results were obtained between experiments performed on different days over the course of several years of experiments. Typical results are reported as simple percentages of cells with cortical puncta. To examine the cell autonomy of the GRASP mutant phenotype, grpA mutant cells were codeveloped with wild-type cells where one strain or the other was labeled with a prespore cell β-galactosidase marker (cotB/lacZ). Harvested cells were immunostained with antibodies to AcbA to score AcbA puncta and with antibodies to β-galactosidase to identify the lacZ-marked cells.
Purification of AcbA-containing vesicles.
Cells developing on standard nitrocellulose filters (
45) were harvested just as fruiting bodies were beginning to undergo terminal morphogenesis, usually after 22 h of starvation. All subsequent steps were carried out either on ice, in a cold room, or in a refrigerated centrifuge at 4°C. A total of 2 × 10
9 cells were scraped from 40 filters into 2 ml of breaking buffer (250 mM sucrose, 1 mM EDTA, 10 mM HEPES-KOH, 1 mM dithiothreitol [DTT] [pH 7.4], and an EDTA-free Complete protease inhibitor cocktail tablet [Roche]). Multicellular structures were disrupted into cell clumps and single cells by two passages through a 1.5-inch-long 18-gauge needle using a 5-ml syringe. The cells were brought to 10 ml with breaking buffer and disrupted by five rounds of Dounce homogenization, followed by passage through a 5-μm-pore-size Nuclepore filter (Corning Nuclepore, Track-Etch membrane) by using a 5-ml syringe. The crude extract was centrifuged at 2,500 ×
g for 10 min to remove whole cells, large fragments of broken cells, and nuclei. The clarified cell extract was centrifuged for 1 h at 100,000 ×
g in a tabletop ultracentrifuge (Beckman TLA100.4 rotor at 40,000 rpm) to pellet vesicles (P100 fraction). The pellet was resuspended in 0.5 ml of breaking buffer and brought up to 20% with Optiprep density gradient medium (Sigma) in the bottom of a 13-ml ultracentrifuge tube. An Optiprep step gradient of 20 to 0% was overlaid (2% increments of 1 ml each) on top of the sample, and the gradient was centrifuged in a Beckman SW40 rotor at 27,000 rpm for 12 h. Fractions (0.5 ml) were collected from the bottom of the gradient. To monitor the purification of the AcbA-containing vesicles, the amount of total protein in each fraction was determined, and the amount of the AcbA protein was estimated by semiquantitative Western blotting using 2-fold dilutions to compare samples. Fractionations were also carried out with Ficoll gradients, and similar results were obtained.
DISCUSSION
Acyl-CoA binding proteins (ACBPs) are small, highly conserved proteins that are found in all eukaryotes. Mammalian ACBP not only shuttles lipid intermediates around the cell but also serves as a precursor of DBI, a peptide that functions both in peripheral tissues and in the central nervous system (
12,
36). In the brain, DBI binds to GABA
A receptors and modulates their response to GABA (
12). DBI can displace diazepam bound to the GABA
A receptor and was named the
diazepam
binding
inhibitor for this property (
11,
12). In a wide variety of tissues, DBI binds to the peripheral receptor localized on mitochondria, where it modulates steroid synthesis, leading to the processing of cholesterol into pregnenolone, the precursor of all steroids (
27,
33). Although DBI clearly acts as an intercellular signal, it is not clear how it or its precursor is released since neither one possesses a signal sequence that would direct it to the conventional endoplasmic reticulum-Golgi pathway.
The ACBP homolog in
Dictyostelium, AcbA, has been shown to bind palmitoyl-CoA with the same affinity as mammalian ACBP as well as to be proteolytically cleaved to generate a conserved intercellular signaling peptide (
2). Most of the AcbA in developing
Dictyostelium cells is soluble, but about 15% could be pelleted with the total membrane fraction (
19). While this is consistent with some of the AcbA being membrane bound, the fact that AcbA binds acyl-CoA in membranes could account for it being found in crude membrane fractions. A small amount of intact, unprocessed AcbA can be found in the extracellular fluid throughout development, but SDF-2 appears only after 22 h of development as the cells are building a fruiting body (
1; C. Anjard and W. F. Loomis, unpublished data). No SDF-2 can be recovered at any time in development from lysates of washed cells, suggesting that AcbA is not processed internally before secretion. During culmination, extracellular AcbA is rapidly cleaved by the TagC protease that is exposed on the surface of prestalk cells in response to GABA or priming with low levels of SDF-2 (
2). The burst of SDF-2 starting 30 s following priming with low levels of SDF-2 indicates that some cellular AcbA is rapidly secreted and is immediately available for processing.
Over 20 proteins have been identified as being secreted by pathways other than the conventional endoplasmic reticulum-Golgi pathway (reviewed in reference
35). These proteins include the yeast mating factor, macrophage migration-inhibitory factor (MIF), the inflammatory cytokine interleukin-1β, and the fibroblast growth factors FGF1 and FGF2 (
17,
28,
40,
41,
43,
44). The
a-factor mating peptide of
Saccharomyces cerevisiae as well as MIF in animals are secreted directly from the cytoplasm by specialized ABC transporters (
17,
42). Since the inhibition of ABC transporters with vanadate, verapamil, or corticosterone did not block the secretion of AcbA, it is unlikely that AcbA release is mediated by one of the many ABC transporters in
Dictyostelium (
19).
Here we showed that AcbA release is dependent on the general membrane trafficking protein NSF, suggesting that membrane fusion is an integral step in this unconventional secretion pathway. Interestingly, NSF has been implicated in the regulation of exocytosis in a number of cell types (
23,
49). The unconventionally secreted protein Ku was also observed to accumulate in vesicles (
34). We have now shown that a portion of AcbA is concentrated in membrane-bound vesicles that appear near the plasma membrane just prior to release. These vesicles are distinct from PSVs, CVs, the endoplasmic reticulum, or p25- or p80-associated endosomes. While we do not know the source of these vesicles, it is clear that lipid binding appears to be required for AcbA's inclusion into these vesicles since the cells reconstituted with the AcbA
Y72A protein did not produce cortical puncta mid-culmination, and we could not recover low-density AcbA-containing vesicles. However, we cannot rule out the possibility that the AcbA
Y72A protein is incorporated into cortical vesicles but is rapidly degraded.
It is important that less than 5% of the cellular AcbA is secreted and processed into SDF-2 peptides (
19). Our biochemical analyses have shown that >95% of the total cellular AcbA remains associated with 22-h-developed cells after they are stimulated to release AcbA (our unpublished observations), so this new secretion system operates on a small fraction of AcbA. Since AcbA-containing vesicles disappear after stimulation along with most other AcbA staining, it seems likely that most of the cellular AcbA is removed during our indirect immunofluorescent staining procedure, or else we would have observed AcbA staining throughout the cell. Thus, our ability to visualize this new secretion mechanism is probably due to our fortuitous selection of the formalin-methanol cell fixation protocol.
Several other general mechanisms of unconventional protein secretion that require membrane trafficking have been proposed, including the sequestration of proteins into vesicles through the autophagy pathway (
29). Indeed, two recent reports demonstrated a requirement of autophagy proteins for the secretion of acyl-CoA binding proteins in
Pichia pastoris and
Saccharomyces cerevisiae, two highly divergent species of yeast (
14,
25). We have demonstrated a similar requirement for the autophagosome machinery in the secretion of SDF-2 and the formation of AcbA-containing cortical vesicles. These results are consistent with the existence of a conserved unconventional secretion pathway for the acyl-CoA binding protein in eukaryotes.
The final step in the secretion pathway of AcbA appears to be the fusion of the cortical vesicles with the surface membrane, or exocytosis of the vesicles from multivesicular bodies (MVBs), in a reaction that requires the function of GRASP (
14,
19). Furthermore, the secretion of Acb1 in
Saccharomyces cerevisiae requires the plasma membrane SNARE protein Sso1 (
14). It was proposed previously that GRASP might tether vesicles of this unconventional secretion pathway to the plasma membrane (
29). However, we observed the cortical localization of AcbA-containing vesicles in the absence of GRASP. This observation suggests that GRASP either is directly involved in regulated vesicle (or MVB) fusion or is required for the correct localization of a fusion-regulating protein or protein complex to the vesicle (or MVB) or the plasma membrane. An understanding of the mechanism by which AcbA is captured into a vesicular element and then released in a signal-dependent and GRASP-dependent manner remains the obvious next challenge.